C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541204 RNF4-201 ENSG00000063978 9606 + 4:2469068-2515854 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverMuscleTestisENST00000541204
Transcript ID Breast Colon Liver Muscle Testis
ENST00000541204 4.876±0.00 2.913±0.00 2.346±0.00 4.460±0.00 6.421±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OB CIL_0003OB_0002 CGP 4:2269582-2462963
CIL_00057G CIL_00057G_0001 CGP 4:2462220-2732565

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182047 Rnf4-006 protein_coding Mus_musculus 0 549
ENSMUST00000030992 Rnf4-001 protein_coding Mus_musculus 0 549
ENSMUST00000182709 Rnf4-002 protein_coding Mus_musculus 0 549
ENSMUST00000183265 Rnf4-003 retained_intron Mus_musculus 0 488
ENSMUST00000182583 Rnf4-005 protein_coding Mus_musculus 0 296
ENSMUST00000183071 Rnf4-012 retained_intron Mus_musculus 0 296
ENSMUST00000182970 Rnf4-004 retained_intron Mus_musculus 0 296
ENSMUST00000181991 Rnf4-011 processed_transcript Mus_musculus 0 261

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