C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541272 UBC-016 ENSG00000150991 9606 - 12:124913035-124914074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000541272
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000541272 126.886±0.00 119.208±0.00 162.420±0.00 125.732±0.00 161.089±0.00 161.913±0.00 124.512±0.00 51.238±0.00 346.396±0.00 254.301±0.00 198.206±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006N CIL_00006N_0002 CGP 12:124776856-124917368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 660
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 658
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 652
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 627
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 627
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 0 597
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 569
ENSDART00000123908 UBC-201 protein_coding Danio_rerio 0 568
ENSMUST00000165126 Uba52-201 protein_coding Mus_musculus 0 303
ENSMUST00000124967 Uba52-006 protein_coding Mus_musculus 0 303
ENSMUST00000135446 Uba52-002 protein_coding Mus_musculus 0 303
ENSMUST00000081940 Uba52-005 protein_coding Mus_musculus 0 303
ENSMUST00000125184 Uba52-001 protein_coding Mus_musculus 0 303
ENSMUST00000129909 Uba52-003 protein_coding Mus_musculus 0 303
ENSMUST00000140679 Uba52-004 protein_coding Mus_musculus 0 303
ENSMUST00000138260 Kxd1-007 protein_coding Mus_musculus 0 303
ENSMUST00000121623 Kxd1-005 protein_coding Mus_musculus 0 303
ENSMUST00000089430 Gm11808-001 protein_coding Mus_musculus 0 303
ENSMUST00000118642 Gm7331-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000082002 Gm7808-201 protein_coding Mus_musculus 0 298
ENSMUST00000119491 Gm11517-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000081864 Gm5239-201 protein_coding Mus_musculus 0 281
ENSMUST00000183770 Gm7866-001 processed_pseudogene Mus_musculus 0 274
ENSDART00000097583 ubb-001 protein_coding Danio_rerio 0 255
ENSMUST00000118611 Gm12328-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000127793 Uba52-007 retained_intron Mus_musculus 5e-34 148
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 8e-27 124

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