C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541996 YTHDF2-008 ENSG00000198492 9606 + 1:28736940-28769775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000541996
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000541996 3.091±0.00 6.478±0.00 5.100±0.00 5.995±0.00 6.665±0.00 1.214±0.00 8.039±0.00 4.455±0.00 7.266±3.54 9.861±0.00 4.361±0.95 3.342±0.00 9.391±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0006959 TAS humoral immune response
GO:0043488 IMP regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:1990247 IDA N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152796 Ythdf2-001 protein_coding Mus_musculus 0 3843
ENSMUST00000102570 Ythdf2-002 retained_intron Mus_musculus 0 2931
ENSMUST00000120248 Gm8401-001 processed_pseudogene Mus_musculus 0 2464
ENSMUST00000120791 Gm6823-001 processed_pseudogene Mus_musculus 0 2459
ENSMUST00000085181 Ythdf2-003 protein_coding Mus_musculus 0 756
ENSMUST00000165072 Ythdf2-004 protein_coding Mus_musculus 0 405
ENSDART00000025171 ythdf1-001 protein_coding Danio_rerio 0 385

Loading