C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542215 DDX3X-004 ENSG00000215301 9606 + X:41334591-41346551 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000542215
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000542215 30.270±0.00 13.634±0.00 28.309±0.00 27.896±0.00 12.557±0.00 13.790±0.00 32.540±0.00 21.482±0.00 42.695±0.00 20.341±0.00 68.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QB CIL_0005QB_0001 CGP X:41085635-41364472
CIL_0007LW CIL_0007LW_0001 UCNEbase X:41232520-41520330
CIL_0001X4 CIL_0001X4_0002 CGP X:41333348-41475710

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000804 Ddx3x-001 protein_coding Mus_musculus 0 1088
ENSMUST00000045108 D1Pas1-001 protein_coding Mus_musculus 0 994
ENSMUST00000188484 Ddx3y-002 nonsense_mediated_decay Mus_musculus 0 905
ENSMUST00000091190 Ddx3y-001 protein_coding Mus_musculus 0 905
ENSMUST00000149639 Ddx3x-005 retained_intron Mus_musculus 0 569
ENSMUST00000153611 Ddx3x-003 retained_intron Mus_musculus 0 568
ENSMUST00000123096 Ddx3x-004 retained_intron Mus_musculus 0 534
ENSMUST00000189614 RP23-12H12.1-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000153851 Ddx3x-002 processed_transcript Mus_musculus 0 220
ENSMUST00000188182 Ddx3y-003 retained_intron Mus_musculus 0.0000000003 71

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