C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 50B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542230 TMEM50B-001 ENSG00000142188 9606 - 21:33449135-33480011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000542230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000542230 14.217±0.00 9.603±0.00 3.256±0.00 8.324±0.54 10.058±2.65 9.865±4.82 6.884±3.99 15.150±13.05 7.018±1.11 8.823±5.49 6.670±3.86 13.218±4.35 7.830±2.45 12.886±5.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WY CIL_0003WY_0001 CGP 21:33324477-33479348
CIL_0003V2 CIL_0003V2_0001 CGP 21:33402896-33480011
CIL_00021F CIL_00021F_0001 CGP 21:33432485-33491720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023686 Tmem50b-001 protein_coding Mus_musculus 0 579
ENSMUST00000141885 Tmem50b-002 nonsense_mediated_decay Mus_musculus 0 324
ENSMUST00000133180 Tmem50b-003 nonsense_mediated_decay Mus_musculus 0 272

Loading