C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39, member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542342 SLC39A11-002 ENSG00000133195 9606 - 17:72645950-73092688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverLungOvaryPlacentaTestisENST00000542342
Transcript ID Adipose Brain Breast Colon Liver Lung Ovary Placenta Testis
ENST00000542342 3.153±0.00 2.441±0.00 2.069±0.00 1.095±0.00 2.345±0.00 0.787±0.21 2.129±0.38 1.855±0.36 1.142±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096Z CIL_00096Z_0001 VISTA 17:72075015-72677314
CIL_00067E CIL_00067E_0001 CGP 17:72121020-73092712
CIL_00067F CIL_00067F_0001 CGP 17:72645949-73176633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006829 IEA zinc ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106633 Slc39a11-004 protein_coding Mus_musculus 0 1256
ENSMUST00000071539 Slc39a11-001 protein_coding Mus_musculus 0 1133
ENSMUST00000042657 Slc39a11-002 protein_coding Mus_musculus 0 641
ENSMUST00000149034 Slc39a11-003 protein_coding Mus_musculus 0 520
ENSMUST00000125890 Slc39a11-007 protein_coding Mus_musculus 0 496
ENSMUST00000146031 Slc39a11-005 protein_coding Mus_musculus 0 237
ENSMUST00000136392 Slc39a11-008 protein_coding Mus_musculus 6.02558e-44 183

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