C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543284 PDCD2-008 ENSG00000071994 9606 - 6:170575328-170579721 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungENST00000543284
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung
ENST00000543284 3.537±0.00 0.858±0.00 0.974±0.02 0.760±0.00 0.314±0.00 0.998±0.00 1.193±0.00 0.734±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125709 Pdcd2-005 retained_intron Mus_musculus 0 361
ENSMUST00000054450 Pdcd2-001 protein_coding Mus_musculus 0 350
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 198

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