C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543796 RAN-001 ENSG00000132341 9606 + 12:130871879-130877678 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000543796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000543796 16.382±0.00 19.254±0.00 3.188±0.00 34.503±2.23 15.270±0.88 12.253±3.12 7.318±1.18 11.009±2.56 9.847±3.22 10.617±0.64 8.594±2.70 25.474±3.36 15.696±5.97 27.557±2.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000430 CIL_000430_0001 CGP 12:130789600-130877678
CIL_00042Z CIL_00042Z_0001 CGP 12:130871879-131141469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000055 IMP ribosomal large subunit export from nucleus
GO:0000056 IMP ribosomal small subunit export from nucleus
GO:0000785 IDA chromatin
GO:0003682 TAS chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0003924 IEA:TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA:IDA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005643 NAS nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006184 IEA GTP catabolic process
GO:0006259 TAS DNA metabolic process
GO:0006606 IEA protein import into nucleus
GO:0006611 IDA protein export from nucleus
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007052 TAS mitotic spindle organization
GO:0007067 TAS mitotic nuclear division
GO:0007165 TAS:IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007286 IEA spermatid development
GO:0010467 TAS gene expression
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0016032 TAS viral process
GO:0019003 IEA GDP binding
GO:0019058 TAS viral life cycle
GO:0019904 IEA protein domain specific binding
GO:0030036 IEA actin cytoskeleton organization
GO:0030521 NAS androgen receptor signaling pathway
GO:0032092 IDA positive regulation of protein binding
GO:0034613 IEA cellular protein localization
GO:0034629 IEA cellular protein complex localization
GO:0043234 IEA protein complex
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0050681 NAS androgen receptor binding
GO:0070062 IDA extracellular vesicular exosome
GO:0075733 TAS intracellular transport of virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031383 Ran-001 protein_coding Mus_musculus 0 1421
ENSMUST00000111343 Ran-002 protein_coding Mus_musculus 0 1290
ENSMUST00000147835 Rasl2-9-001 protein_coding Mus_musculus 0 1072
ENSMUST00000120980 Gm13461-001 processed_pseudogene Mus_musculus 0 758

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