C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class B, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546215 SCARB1-007 ENSG00000073060 9606 - 12:124778499-124863783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLungOvaryPlacentaENST00000546215
Transcript ID Adipose Bladder Brain Breast Colon Kidney Lung Ovary Placenta
ENST00000546215 23.562±0.00 0.620±0.00 7.468±0.00 6.745±5.65 11.440±0.00 11.402±0.00 1.817±0.00 2.238±0.00 17.599±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000399 CIL_000399_0001 CGP 12:124324415-124882668
CIL_00006N CIL_00006N_0002 CGP 12:124776856-124917368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007155 IEA cell adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148373 Scarb1-003 retained_intron Mus_musculus 0 990
ENSMUST00000111390 Scarb1-002 protein_coding Mus_musculus 0 990
ENSMUST00000086075 Scarb1-001 protein_coding Mus_musculus 0 990
ENSMUST00000127148 Scarb1-005 protein_coding Mus_musculus 0 320

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