C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546846 RP3-432I18.1-001 ENSG00000257905 9606 + 12:47593208-47593440 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastTestisENST00000546846
Transcript ID Adipose Adrenal Breast Testis
ENST00000546846 0.135±0.00 0.799±0.00 0.151±0.00 0.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YR CIL_0005YR_0001 CGP 12:47079603-47706061

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 189
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 189
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 189
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 5.60519e-45 183
ENSDART00000123908 UBC-201 protein_coding Danio_rerio 9.99967e-42 172
ENSDART00000156859 rps27a-002 protein_coding Danio_rerio 1e-26 122
ENSDART00000129530 rps27a-001 protein_coding Danio_rerio 1e-26 122
ENSDART00000156817 rps27a-003 retained_intron Danio_rerio 2e-19 99
ENSDART00000154932 rps27a-005 processed_transcript Danio_rerio 1e-16 90
ENSDART00000157035 rps27a-004 retained_intron Danio_rerio 0.000000006 64

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