C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musashi RNA-binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546985 MSI1-002 ENSG00000135097 9606 - 12:120346222-120368069 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverLungOvaryPlacentaTestisENST00000546985
Transcript ID Adrenal Brain Colon Heart Liver Lung Ovary Placenta Testis
ENST00000546985 0.156±0.00 1.188±1.03 0.289±0.00 0.100±0.00 0.072±0.00 0.075±0.00 0.157±0.00 0.120±0.00 6.278±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131079 Msi1-003 processed_transcript Mus_musculus 0 797
ENSMUST00000136586 Msi1-008 processed_transcript Mus_musculus 0 785
ENSMUST00000067168 Msi1-004 protein_coding Mus_musculus 0 721
ENSMUST00000151444 Msi1-002 retained_intron Mus_musculus 0 721
ENSMUST00000150779 Msi1-001 protein_coding Mus_musculus 0 721
ENSMUST00000139918 Msi1-006 retained_intron Mus_musculus 0 606
ENSMUST00000145840 Msi1-007 processed_transcript Mus_musculus 0 553
ENSMUST00000130849 Msi1-009 retained_intron Mus_musculus 0 497

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