C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547566 HNRNPA1-006 ENSG00000135486 9606 + 12:54280748-54287088 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungOvaryPlacentaENST00000547566
Transcript ID Liver Lung Ovary Placenta
ENST00000547566 8.017±0.00 38.416±0.00 255.745±0.00 98.543±21.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088
CIL_0002TL CIL_0002TL_0002 CGP 12:54280193-54301121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003697 IDA single-stranded DNA binding
GO:0003723 TAS RNA binding
GO:0003727 IC single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 TAS mRNA processing
GO:0006405 IC RNA export from nucleus
GO:0008219 IEA cell death
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051028 IEA mRNA transport
GO:0051168 IDA nuclear export
GO:0051170 IDA nuclear import
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1435
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1384
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1332
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1297
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1282
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1267
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 1118
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 1103
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 1074
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 1040
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 1035
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 907
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 771
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 771
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 4e-38 163

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