C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547708 HNRNPA1-015 ENSG00000135486 9606 + 12:54280748-54283878 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000547708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000547708 190.881±0.00 216.918±0.00 26.193±0.00 73.421±57.27 95.278±59.29 129.833±99.24 31.252±21.59 56.512±36.63 36.046±10.31 75.734±46.89 49.415±12.67 319.058±276.81 524.487±0.00 191.690±40.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088
CIL_0002TL CIL_0002TL_0002 CGP 12:54280193-54301121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 514
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 514
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 464
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 351
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 5.00264e-43 178
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 5.00264e-43 178

Loading