C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain and actin binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547825 LIMA1-007 ENSG00000050405 9606 - 12:50175788-50202112 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverLungMuscleOvaryENST00000547825
Transcript ID Adipose Adrenal Brain Breast Heart Liver Lung Muscle Ovary
ENST00000547825 2.559±0.00 3.041±0.00 0.515±0.17 7.182±0.00 0.838±0.00 3.083±0.00 3.356±0.00 0.393±0.00 2.187±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_0000LJ CIL_0000LJ_0001 CGP 12:50129306-50283546
CIL_00051T CIL_00051T_0001 CGP 12:50175788-50396622

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073691 Lima1-001 protein_coding Mus_musculus 0 961
ENSMUST00000109024 Lima1-003 protein_coding Mus_musculus 0 961
ENSMUST00000172119 Lima1-004 retained_intron Mus_musculus 0 237

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