C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548446 ATF7-007 ENSG00000170653 9606 - 12:53507856-53626370 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_00061S CIL_00061S_0001 CGP 12:53507856-53677408

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0008134 IDA transcription factor binding
GO:0016032 IEA viral process
GO:0019899 IPI enzyme binding
GO:0034399 IDA nuclear periphery
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0051019 IDA mitogen-activated protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184485 Atf7-006 protein_coding Mus_musculus 0 1786
ENSMUST00000184616 Atf7-002 protein_coding Mus_musculus 0 1786
ENSMUST00000184906 Atf7-008 protein_coding Mus_musculus 0 1354
ENSMUST00000169033 Atf7-007 protein_coding Mus_musculus 0 1352
ENSMUST00000108828 Atf7-001 protein_coding Mus_musculus 0 1352
ENSMUST00000184772 Gm28047-001 nonsense_mediated_decay Mus_musculus 0 1352
ENSMUST00000183452 Atf7-012 nonsense_mediated_decay Mus_musculus 0 571
ENSMUST00000183727 Atf7-004 retained_intron Mus_musculus 0 558
ENSMUST00000183765 Atf7-013 protein_coding Mus_musculus 0 490
ENSMUST00000185070 Atf7-010 protein_coding Mus_musculus 0 357
ENSMUST00000184077 Atf7-011 protein_coding Mus_musculus 0 357
ENSMUST00000184918 Atf7-014 retained_intron Mus_musculus 0 265
ENSMUST00000183786 Atf7-009 retained_intron Mus_musculus 3e-21 108

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