C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548938 HDAC7-003 ENSG00000061273 9606 - 12:47782726-47793542 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLungOvaryPlacentaTestisENST00000548938
Transcript ID Adrenal Colon Kidney Lung Ovary Placenta Testis
ENST00000548938 22.436±0.00 2.443±0.00 1.466±0.00 22.313±0.00 29.273±3.10 26.384±0.00 10.581±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OC CIL_0002OC_0001 CGP 12:47734672-47782753
CIL_0003DF CIL_0003DF_0002 CGP 12:47753916-47833132
CIL_0003DI CIL_0003DI_0002 CGP 12:47782722-47943048

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118294 Hdac7-007 protein_coding Mus_musculus 0 1663
ENSMUST00000116409 Hdac7-002 protein_coding Mus_musculus 0 1663
ENSMUST00000119670 Hdac7-003 protein_coding Mus_musculus 0 1663
ENSMUST00000121514 Hdac7-008 protein_coding Mus_musculus 0 1663
ENSMUST00000088402 Hdac7-005 protein_coding Mus_musculus 0 1663
ENSMUST00000116408 Hdac7-001 protein_coding Mus_musculus 0 1663
ENSMUST00000079838 Hdac7-006 protein_coding Mus_musculus 0 1663
ENSMUST00000120683 Hdac7-004 protein_coding Mus_musculus 0 944
ENSMUST00000107152 Hdac5-001 protein_coding Mus_musculus 0 520
ENSMUST00000107150 Hdac5-019 protein_coding Mus_musculus 0 520
ENSMUST00000124077 Hdac5-007 nonsense_mediated_decay Mus_musculus 0 520
ENSMUST00000008999 Hdac5-002 protein_coding Mus_musculus 0 520
ENSMUST00000156045 Hdac7-009 nonsense_mediated_decay Mus_musculus 0 401
ENSMUST00000134258 Hdac7-011 protein_coding Mus_musculus 0 399
ENSMUST00000135651 Hdac7-012 protein_coding Mus_musculus 0 399
ENSMUST00000149087 Hdac5-020 retained_intron Mus_musculus 0 355
ENSMUST00000133651 Hdac5-010 retained_intron Mus_musculus 8e-38 163

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