C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YLP motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549293 YLPM1-002 ENSG00000119596 9606 + 14:74781385-74836190 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000549293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000549293 4.190±0.00 5.994±0.00 1.073±0.00 5.014±2.14 3.281±1.64 2.929±1.54 1.816±0.21 3.882±3.42 3.067±0.76 1.866±0.63 3.606±2.55 5.280±1.36 2.213±0.80 12.285±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AX CIL_0005AX_0001 CGP 14:74713144-74859435
CIL_0003U2 CIL_0003U2_0001 CGP 14:74763366-74871940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164558 Ylpm1-002 nonsense_mediated_decay Mus_musculus 0 6336
ENSMUST00000021670 Ylpm1-001 protein_coding Mus_musculus 0 5624
ENSMUST00000101202 Ylpm1-201 protein_coding Mus_musculus 0 2161
ENSMUST00000168977 Ylpm1-004 protein_coding Mus_musculus 0 2161
ENSMUST00000169150 Ylpm1-003 retained_intron Mus_musculus 0 1253
ENSMUST00000166605 Ylpm1-005 retained_intron Mus_musculus 0 627
ENSMUST00000167838 Ylpm1-006 retained_intron Mus_musculus 0 527
ENSMUST00000165803 Ylpm1-007 retained_intron Mus_musculus 0 490

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