C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein L42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549982 MRPL42-001 ENSG00000198015 9606 + 12:93467488-93516213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000549982
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000549982 1.203±0.00 0.522±0.00 0.771±0.00 2.327±0.61 0.757±0.11 0.699±0.00 0.830±0.16 0.530±0.00 0.637±0.11 0.116±0.00 1.233±0.44 0.270±0.08 0.873±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X9 CIL_0005X9_0002 CGP 12:93405673-93516213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 NAS structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005763 IDA mitochondrial small ribosomal subunit
GO:0005886 IDA plasma membrane
GO:0006412 NAS translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000002 62
ENSMUST00000162168 Zkscan5-004 nonsense_mediated_decay Mus_musculus 0.0003 55
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0003 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0003 55

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