C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, BED-type containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550078 ZBED6-001 ENSG00000257315 9606 + 1:203796309-203800558 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryENST00000550078
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000550078 9.547±0.00 10.044±0.00 11.292±0.00 3.066±0.00 5.784±0.00 11.556±0.00 15.752±0.00 3.274±0.00 13.670±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179598 Zbed6-202 protein_coding Mus_musculus 0 4228
ENSMUST00000186476 Zbed6-001 nonsense_mediated_decay Mus_musculus 0 4228
ENSMUST00000190574 ZBED6-001 protein_coding Mus_musculus 0 4228

Loading