C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550482 HNRNPA1-018 ENSG00000135486 9606 + 12:54282198-54284569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainLungOvaryPlacentaTestisENST00000550482
Transcript ID Adipose Adrenal Brain Lung Ovary Placenta Testis
ENST00000550482 95.306±0.00 103.143±0.00 49.858±0.00 13.089±0.00 200.831±35.14 157.503±0.00 73.830±23.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088
CIL_0002TL CIL_0002TL_0002 CGP 12:54280193-54301121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 843
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 835
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 819
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 760
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 732
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 678
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 669
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 531
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 525
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 2e-38 163

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