C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage gated, type VIII, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551216 SCN8A-004 ENSG00000196876 9606 + 12:51686423-51745948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryENST00000551216
Transcript ID Brain Breast Colon Lung Ovary
ENST00000551216 21.950±0.00 0.334±0.00 0.643±0.00 0.179±0.00 0.280±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JW CIL_0006JW_0001 CGP 12:51391317-51812864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 IEA ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 1886
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 1886
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 1781
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 1077
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 364
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 364
ENSMUST00000144254 Scn2a1-002 protein_coding Mus_musculus 0 348
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 348
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 348
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 348
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 348
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 270
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 267
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 0 250
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0.00000000000004 84
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0.00000000000004 84

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