C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000552351 CHPT1-003 ENSG00000111666 9606 + 12:101697692-101729051 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastMuscleENST00000552351
Transcript ID Adrenal Brain Breast Muscle
ENST00000552351 6.537±0.00 4.206±0.00 13.400±0.00 6.125±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001558 NAS regulation of cell growth
GO:0004142 IDA diacylglycerol cholinephosphotransferase activity
GO:0006629 TAS lipid metabolic process
GO:0006644 TAS phospholipid metabolic process
GO:0006656 IDA phosphatidylcholine biosynthetic process
GO:0006657 NAS CDP-choline pathway
GO:0006663 IDA platelet activating factor biosynthetic process
GO:0008654 IEA phospholipid biosynthetic process
GO:0016020 NAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups
GO:0019992 NAS diacylglycerol binding
GO:0043231 NAS intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126074 Chpt1-005 nonsense_mediated_decay Mus_musculus 0 1742
ENSMUST00000143108 Chpt1-002 nonsense_mediated_decay Mus_musculus 0 1393
ENSMUST00000117440 Chpt1-004 protein_coding Mus_musculus 0 922
ENSMUST00000020253 Chpt1-001 protein_coding Mus_musculus 0 784
ENSMUST00000139109 Chpt1-003 nonsense_mediated_decay Mus_musculus 0 761
ENSMUST00000117579 Chpt1-007 protein_coding Mus_musculus 0 686
ENSMUST00000073783 Chpt1-006 protein_coding Mus_musculus 0 686
ENSMUST00000134318 Chpt1-008 protein_coding Mus_musculus 0 632
ENSMUST00000122228 Gm13131-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000148899 Chpt1-009 protein_coding Mus_musculus 0 287
ENSMUST00000125612 Sycp3-003 protein_coding Mus_musculus 0 204
ENSMUST00000123244 Sycp3-002 nonsense_mediated_decay Mus_musculus 4e-28 130
ENSMUST00000020252 Sycp3-001 protein_coding Mus_musculus 4e-28 130

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