C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCHC-type and RNA binding motif 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000552673 ZCRB1-005 ENSG00000139168 9606 - 12:42312931-42326087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000552673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000552673 4.725±0.00 7.654±0.00 3.177±0.00 10.146±4.36 6.886±3.15 5.301±1.32 12.421±0.00 6.884±2.18 6.448±0.68 7.281±5.37 7.383±0.00 10.640±3.93 7.921±2.65 21.973±2.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DG CIL_0003DG_0002 CGP 12:42312078-42590355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076070 Zcrb1-001 protein_coding Mus_musculus 0 726
ENSMUST00000162160 Zcrb1-002 protein_coding Mus_musculus 0 712
ENSMUST00000159723 Zcrb1-006 retained_intron Mus_musculus 0 544
ENSMUST00000160407 Zcrb1-007 retained_intron Mus_musculus 0 529
ENSMUST00000161955 Zcrb1-005 retained_intron Mus_musculus 0 448
ENSMUST00000161409 Zcrb1-003 nonsense_mediated_decay Mus_musculus 0 388
ENSMUST00000159105 Zcrb1-008 retained_intron Mus_musculus 0 189
ENSMUST00000159719 Zcrb1-004 retained_intron Mus_musculus 0.000004 57

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