C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 24, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554034 CDH24-007 ENSG00000139880 9606 - 14:23047660-23055826 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000554034
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000554034 0.328±0.00 0.454±0.00 0.557±0.00 0.831±0.10 0.447±0.31 0.079±0.00 0.364±0.22 1.170±0.00 0.570±0.22 0.183±0.08 1.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MR CIL_0006MR_0001 CGP 14:23042167-23057538

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA:IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IPI beta-catenin binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0045294 IPI alpha-catenin binding
GO:0070097 IPI delta-catenin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067784 Cdh24-201 protein_coding Mus_musculus 0 3057
ENSMUST00000173083 Gm20726-201 protein_coding Mus_musculus 0 309
ENSDART00000002279 cdh11-201 protein_coding Danio_rerio 0 239
ENSDART00000111261 protein_coding Danio_rerio 0 228
ENSDART00000138769 protein_coding Danio_rerio 0 228
ENSDART00000127332 cdh11-001 protein_coding Danio_rerio 0 213
ENSDART00000054552 CDH8-201 protein_coding Danio_rerio 1e-25 122

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