C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554738 NRXN3-002 ENSG00000021645 9606 + 14:78242391-79862033 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryENST00000554738
Transcript ID Brain Breast Ovary
ENST00000554738 3.215±0.28 0.515±0.00 0.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U1 CIL_0004U1_0001 CGP 14:77800083-79868290
CIL_0008FT CIL_0008FT_0001 VISTA 14:78139980-78740994
CIL_0004U0 CIL_0004U0_0001 CGP 14:78242391-80387757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005515 IEA protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0007158 TAS neuron cell-cell adhesion
GO:0007411 TAS axon guidance
GO:0007612 IGI learning
GO:0030534 IGI adult behavior
GO:0035176 IGI social behavior
GO:0046872 IEA metal ion binding
GO:0050839 TAS cell adhesion molecule binding
GO:0051965 IEA positive regulation of synapse assembly
GO:0071625 IGI vocalization behavior
GO:0090129 IEA positive regulation of synapse maturation
GO:0097109 TAS neuroligin family protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167103 Nrxn3-003 nonsense_mediated_decay Mus_musculus 0 5797
ENSMUST00000163134 Nrxn3-001 protein_coding Mus_musculus 0 5227
ENSMUST00000057634 Nrxn3-002 protein_coding Mus_musculus 0 4148
ENSMUST00000167887 Nrxn3-201 protein_coding Mus_musculus 0 3609
ENSMUST00000190626 Nrxn3-012 nonsense_mediated_decay Mus_musculus 0 3470
ENSMUST00000167734 Nrxn3-004 retained_intron Mus_musculus 0 2750
ENSDART00000090934 nrxn3b-202 protein_coding Danio_rerio 0 1459
ENSDART00000127050 nrxn3b-203 protein_coding Danio_rerio 0 1459
ENSDART00000090646 nrxn3b-201 protein_coding Danio_rerio 0 1452
ENSMUST00000110130 Nrxn3-006 protein_coding Mus_musculus 0 1131
ENSMUST00000110138 Nrxn3-005 retained_intron Mus_musculus 0 1014
ENSDART00000154519 nrxn3a-002 nonsense_mediated_decay Danio_rerio 0 854
ENSMUST00000113461 Nrxn2-008 protein_coding Mus_musculus 0 832
ENSDART00000088179 nrxn3a-202 protein_coding Danio_rerio 0 765
ENSDART00000064241 nrxn3a-201 protein_coding Danio_rerio 0 765
ENSDART00000153697 nrxn3a-003 protein_coding Danio_rerio 0 765
ENSDART00000149694 nrxn3b-001 protein_coding Danio_rerio 0 610
ENSMUST00000164072 Nrxn3-008 processed_transcript Mus_musculus 0 558
ENSMUST00000110133 Nrxn3-010 protein_coding Mus_musculus 0 555
ENSMUST00000077182 Nrxn2-201 protein_coding Mus_musculus 0 492
ENSMUST00000170533 Nrxn3-009 processed_transcript Mus_musculus 0 444
ENSMUST00000150792 Nrxn2-005 retained_intron Mus_musculus 0 403
ENSMUST00000113462 Nrxn2-001 protein_coding Mus_musculus 0 403
ENSMUST00000155158 Nrxn2-014 protein_coding Mus_musculus 0 344
ENSMUST00000137166 Nrxn2-013 protein_coding Mus_musculus 0 311
ENSMUST00000124815 Nrxn2-011 processed_transcript Mus_musculus 0 270
ENSMUST00000157014 Nrxn2-007 processed_transcript Mus_musculus 0 261
ENSDART00000141629 nrxn2a-001 protein_coding Danio_rerio 0 237
ENSDART00000087657 nrxn2a-201 protein_coding Danio_rerio 0 235
ENSMUST00000190030 Nrxn3-013 processed_transcript Mus_musculus 0 224
ENSMUST00000163944 Nrxn3-007 processed_transcript Mus_musculus 0 224

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