C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555663 CTD-2643K12.1-001 ENSG00000258895 9606 + 15:94033658-94034177 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalMuscleOvaryENST00000555663
Transcript ID Adipose Adrenal Muscle Ovary
ENST00000555663 0.049±0.00 0.053±0.00 0.091±0.00 0.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UC CIL_0008UC_0001 VISTA 15:93681345-94283913

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080178 Pabpc4-001 protein_coding Mus_musculus 0 473
ENSMUST00000183940 Pabpc4-005 nonsense_mediated_decay Mus_musculus 0 473
ENSMUST00000106241 Pabpc4-004 protein_coding Mus_musculus 0 473
ENSMUST00000078734 Pabpc4-002 protein_coding Mus_musculus 0 449
ENSMUST00000106243 Pabpc4-003 protein_coding Mus_musculus 0 449
ENSMUST00000081204 Gm10110-201 protein_coding Mus_musculus 0 448
ENSMUST00000119849 Gm12623-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000119791 Gm12620-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000117339 Gm12626-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000140182 Gm12612-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000146156 Pabpc4-007 retained_intron Mus_musculus 0 374
ENSMUST00000124991 Pabpc4-006 processed_transcript Mus_musculus 0 372
ENSMUST00000171455 Gm17572-201 processed_pseudogene Mus_musculus 0 368
ENSMUST00000117060 Gm11841-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000120647 Gm11839-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000119395 Gm5466-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000118386 Gm15332-001 unprocessed_pseudogene Mus_musculus 0 257
ENSMUST00000146065 Gm16345-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000121408 Gm15329-001 unprocessed_pseudogene Mus_musculus 6.99949e-42 174

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