C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 3 class III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555810 TUBB3-004 ENSG00000258947 9606 + 16:89921392-89935235 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000555810
Transcript ID Brain
ENST00000555810 113.426±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005N CIL_00005N_0001 CGP 16:89921392-89968060

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 900
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 800
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 684
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 617
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 606
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 606
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 551
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 540
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 540
ENSDART00000024135 protein_coding Danio_rerio 0 523
ENSDART00000129104 protein_coding Danio_rerio 0 523
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 514
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 483
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 479
ENSMUST00000117711 Gm11892-001 processed_pseudogene Mus_musculus 0 385

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