C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidylprolyl isomerase A (cyclophilin A) pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557078 PPIAP6-001 ENSG00000258477 9606 - 14:68421698-68422196 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000557078
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000557078 0.064±0.00 1.124±0.00 0.030±0.00 0.028±0.00 0.159±0.00 0.389±0.00 0.030±0.00 0.055±0.00 0.127±0.00 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CJ CIL_0002CJ_0001 CGP 14:67727374-68730218
CIL_0001JV CIL_0001JV_0002 CGP 14:67819779-68796253
CIL_00083I CIL_00083I_0001 VISTA 14:67838982-68441740
CIL_00086O CIL_00086O_0001 VISTA 14:67868126-68469343
CIL_0008U1 CIL_0008U1_0001 VISTA 14:68076040-68679058
CIL_0008VV CIL_0008VV_0001 VISTA 14:68209687-68812666

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 601
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 579
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 560
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 558
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 558
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 549
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 547
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 531
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 510
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 4.06377e-44 182

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