C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) polymerase alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557320 PAPOLA-002 ENSG00000090060 9606 + 14:96502401-96534885 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLungMuscleOvaryENST00000557320
Transcript ID Bladder Brain Breast Colon Heart Lung Muscle Ovary
ENST00000557320 3.073±0.00 7.358±0.85 7.814±0.00 6.279±0.00 3.186±0.00 7.994±2.02 2.216±0.00 6.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HI CIL_0003HI_0001 CGP 14:96392111-96567111
CIL_0003HJ CIL_0003HJ_0001 CGP 14:96501433-96931722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 ISS:IEA polynucleotide adenylyltransferase activity
GO:0005524 ISS ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016779 IEA nucleotidyltransferase activity
GO:0030145 ISS manganese ion binding
GO:0031124 TAS mRNA 3'-end processing
GO:0043631 ISS:IEA RNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166735 Papola-007 protein_coding Mus_musculus 0 1509
ENSMUST00000163473 Papola-009 protein_coding Mus_musculus 0 1500
ENSMUST00000021535 Papola-003 nonsense_mediated_decay Mus_musculus 0 1500
ENSMUST00000168186 Papola-002 protein_coding Mus_musculus 0 1500
ENSMUST00000109901 Papola-001 protein_coding Mus_musculus 0 1500
ENSMUST00000166498 Papola-005 retained_intron Mus_musculus 0 1480
ENSMUST00000170002 Papola-010 protein_coding Mus_musculus 0 1362
ENSMUST00000163805 Papola-006 retained_intron Mus_musculus 0 1236
ENSMUST00000165584 Papola-013 processed_transcript Mus_musculus 0 1022
ENSMUST00000099400 Papolb-001 protein_coding Mus_musculus 0 928
ENSMUST00000170540 Papola-015 protein_coding Mus_musculus 0 918
ENSMUST00000169938 Papola-004 nonsense_mediated_decay Mus_musculus 0 898
ENSMUST00000172040 Papola-012 processed_transcript Mus_musculus 0 876
ENSMUST00000118939 Gm14245-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000166329 Papola-008 nonsense_mediated_decay Mus_musculus 0 638
ENSMUST00000170831 Papola-016 retained_intron Mus_musculus 0 484
ENSMUST00000169524 Papola-017 nonsense_mediated_decay Mus_musculus 0 477
ENSMUST00000164326 Papola-014 nonsense_mediated_decay Mus_musculus 0 409

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