C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | cancer susceptibility candidate 4 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000557945  |
CASC4-005 |
ENSG00000166734 |
9606 | + |
15:44288731-44348918  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000687 | CIL_000687_0001 | CGP | 15:43870761-44415758 |
| CIL_0004QJ | CIL_0004QJ_0002 | CGP | 15:44288729-44529038 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005794 | IDA | Golgi apparatus |
| GO:0016021 | IEA | integral component of membrane |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000110586
|
Casc4-201 | protein_coding | Mus_musculus | 0 | 686 |
|
ENSMUST00000089915
|
Casc4-003 | protein_coding | Mus_musculus | 0 | 686 |
|
ENSMUST00000089912
|
Casc4-002 | protein_coding | Mus_musculus | 0 | 686 |
|
ENSMUST00000135416
|
Casc4-006 | retained_intron | Mus_musculus | 0 | 686 |
|
ENSMUST00000078752
|
Casc4-001 | protein_coding | Mus_musculus | 0 | 686 |
|
ENSMUST00000127475
|
Casc4-005 | retained_intron | Mus_musculus | 0 | 573 |
|
ENSMUST00000126256
|
Casc4-004 | processed_transcript | Mus_musculus | 0 | 202 |
|
ENSMUST00000136023
|
Casc4-007 | protein_coding | Mus_musculus | 1.4013e-45 | 187 |
