C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558330 APBA2-002 ENSG00000034053 9606 + 15:28886022-29117717 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartLiverLungOvaryPlacentaTestisENST00000558330
Transcript ID Adrenal Colon Heart Liver Lung Ovary Placenta Testis
ENST00000558330 2.588±0.00 0.082±0.00 0.040±0.00 0.257±0.00 0.535±0.00 0.592±0.14 0.733±0.43 1.421±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HE CIL_0006HE_0001 CGP 15:28884483-29570723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0007399 TAS nervous system development
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107507 Apba2-002 protein_coding Mus_musculus 0 2647
ENSMUST00000032732 Apba2-001 protein_coding Mus_musculus 0 1295
ENSMUST00000025830 Apba1-201 protein_coding Mus_musculus 0 743
ENSDART00000006640 apba1a-201 protein_coding Danio_rerio 0 651
ENSDART00000137030 apba1a-001 protein_coding Danio_rerio 0 651
ENSDART00000092406 apba2a-201 protein_coding Danio_rerio 0 573
ENSDART00000153968 apba2a-001 protein_coding Danio_rerio 0 523
ENSMUST00000137732 Apba2-005 protein_coding Mus_musculus 0 387
ENSDART00000085661 apba2b-201 protein_coding Danio_rerio 2.99878e-43 182
ENSMUST00000138829 Apba2-004 protein_coding Mus_musculus 2e-39 169

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