C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB8B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559006 RAB8B-005 ENSG00000166128 9606 + 15:63189606-63262776 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLiverLungMuscleOvaryTestisENST00000559006
Transcript ID Bladder Breast Heart Liver Lung Muscle Ovary Testis
ENST00000559006 4.824±0.00 10.036±0.00 1.182±0.00 11.066±0.00 11.066±0.00 1.849±0.00 8.235±0.00 6.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041139 Rab8b-201 protein_coding Mus_musculus 0 828
ENSMUST00000176033 Gm20689-001 processed_pseudogene Mus_musculus 0 420

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