C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559063 CTD-2651B20.2-001 ENSG00000259338 9606 + 15:45215547-45215943 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryTestisENST00000559063
Transcript ID Brain Colon Liver Ovary Testis
ENST00000559063 0.051±0.00 0.089±0.00 0.084±0.00 0.259±0.00 0.257±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NE CIL_0004NE_0001 CGP 15:45167214-45277845

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 486
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 486
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 473
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 470
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 420
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 414
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 364
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 322
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000061597 4921517D22Rik-201 protein_coding Mus_musculus 0 259
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 213
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 209

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