C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 71
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559135 HNRNPA1P71-001 ENSG00000259686 9606 + 15:33012119-33013068 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMusclePlacentaENST00000559135
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Muscle Placenta
ENST00000559135 0.014±0.00 0.059±0.00 0.014±0.00 0.026±0.00 0.036±0.00 0.262±0.00 0.014±0.00 0.013±0.00 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0001 VISTA 15:32499326-33100458

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 937
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 937
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 935
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 780
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 780
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 774
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 553

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