C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: high mobility group nucleosomal binding domain 2 pseudogene 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559378 HMGN2P47-001 ENSG00000259246 9606 - 15:67000777-67001181 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderTestisENST00000559378
Transcript ID Bladder Testis
ENST00000559378 1.783±0.00 0.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R9 CIL_0008R9_0001 VISTA 15:66606636-67207796
CIL_000471 CIL_000471_0002 CGP 15:66702228-67195195
CIL_0007L5 CIL_0007L5_0001 UCNEbase 15:66906943-67787880

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 418
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 418
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 418
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 405
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 396
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 387
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 387
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 387
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 383
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 383
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 311
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 311
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 2e-26 122

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