C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559711 USP3-006 ENSG00000140455 9606 + 15:63544625-63591136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMusclePlacentaENST00000559711
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Placenta
ENST00000559711 3.634±0.00 1.604±0.00 3.173±0.00 0.796±0.00 4.931±3.36 4.650±0.00 4.449±0.00 1.591±0.00 2.095±0.65

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174387 Usp3-011 protein_coding Mus_musculus 0 1956
ENSMUST00000127569 Usp3-001 protein_coding Mus_musculus 0 1956
ENSMUST00000139547 Usp3-003 nonsense_mediated_decay Mus_musculus 0 1873
ENSMUST00000098613 Usp3-002 protein_coding Mus_musculus 0 1423
ENSMUST00000034940 Usp3-004 retained_intron Mus_musculus 0 1304
ENSMUST00000124694 Usp3-007 processed_transcript Mus_musculus 0 562
ENSMUST00000150840 Usp3-009 retained_intron Mus_musculus 0 544
ENSMUST00000154476 Usp3-008 retained_intron Mus_musculus 0 440
ENSMUST00000132255 Usp3-010 retained_intron Mus_musculus 0 390
ENSMUST00000124519 Usp3-006 retained_intron Mus_musculus 0 235

Loading