C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560961 LHX2-004 ENSG00000106689 9606 + 9:124001670-124015361 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000560961
Transcript ID Placenta Testis
ENST00000560961 1.912±0.00 2.369±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WO CIL_0006WO_0001 CGP 9:123379654-124033301
CIL_000847 CIL_000847_0001 VISTA 9:123475439-124077650
CIL_0008FJ CIL_0008FJ_0001 VISTA 9:123533313-124136573
CIL_0007MV CIL_0007MV_0001 UCNEbase 9:123742251-124385977
CIL_0008N3 CIL_0008N3_0001 VISTA 9:123985007-124587009
CIL_0006WH CIL_0006WH_0001 CGP 9:124001670-124353307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133661 Lhx2-005 protein_coding Mus_musculus 0 704
ENSMUST00000143783 Lhx2-003 protein_coding Mus_musculus 0 662
ENSMUST00000000253 Lhx2-001 protein_coding Mus_musculus 0 660
ENSMUST00000176229 Lhx2-007 nonsense_mediated_decay Mus_musculus 0 579
ENSMUST00000155964 Lhx2-002 protein_coding Mus_musculus 0 494
ENSMUST00000175896 Lhx2-006 retained_intron Mus_musculus 0 385
ENSMUST00000093486 Lhx9-201 protein_coding Mus_musculus 0 305
ENSMUST00000112026 Lhx9-005 protein_coding Mus_musculus 0 305
ENSMUST00000046870 Lhx9-001 protein_coding Mus_musculus 0 305
ENSMUST00000112030 Lhx9-004 protein_coding Mus_musculus 0 305
ENSMUST00000019374 Lhx9-002 protein_coding Mus_musculus 0 305
ENSMUST00000149664 Lhx2-004 retained_intron Mus_musculus 0 287

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