C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: LIM homeobox transcription factor 1, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561065 LMX1B-003 ENSG00000136944 9606 + 9:126614469-126696549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000561065
Transcript ID Ovary
ENST00000561065 0.499±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X9 CIL_0007X9_0001 VISTA 9:126036032-126639702
CIL_0008M0 CIL_0008M0_0001 VISTA 9:126136121-126738460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041730 Lmx1b-001 protein_coding Mus_musculus 0 1212
ENSMUST00000176067 Lmx1b-003 protein_coding Mus_musculus 0 1155
ENSMUST00000137559 Lmx1b-002 processed_transcript Mus_musculus 0 538

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