C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561804 RP11-618N24.1-001 ENSG00000261635 9606 + 15:36613474-36614198 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000561804
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000561804 0.097±0.00 0.173±0.00 0.126±0.00 0.132±0.00 0.216±0.13 0.249±0.19 1.625±1.41 0.087±0.00 1.100±0.00 0.340±0.00 0.095±0.00 0.142±0.03 0.045±0.00 0.033±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HI CIL_0006HI_0001 CGP 15:35217345-36810248
CIL_0007MM CIL_0007MM_0001 UCNEbase 15:35253766-37880700
CIL_0008V8 CIL_0008V8_0001 VISTA 15:36226820-36828494
CIL_00088L CIL_00088L_0001 VISTA 15:36372618-36973897
CIL_0008GX CIL_0008GX_0001 VISTA 15:36373931-36975330
CIL_00084J CIL_00084J_0001 VISTA 15:36391617-36991995
CIL_0006QS CIL_0006QS_0001 CGP 15:36579611-37101299
CIL_00087U CIL_00087U_0001 VISTA 15:36595901-37198492
CIL_0008KD CIL_0008KD_0001 VISTA 15:36599207-37200420

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 885
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 880
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 728
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 728
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 660
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 660
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 549
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 549
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 508
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 399
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 359
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 357
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 279
ENSMUST00000116350 Tpm3-rs2-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 235
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 0 198

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