C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562879 RPL13-011 ENSG00000167526 9606 + 16:89560682-89563473 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000562879
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000562879 172.470±0.00 189.261±0.00 13.128±0.00 67.569±32.82 63.224±31.54 117.281±82.96 42.340±30.49 45.208±28.95 42.376±3.03 115.881±82.30 148.281±112.63 95.784±69.87 149.801±61.59 90.795±42.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120234 Gm12918-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000000756 Rpl13-001 protein_coding Mus_musculus 0 425
ENSMUST00000121821 Gm15710-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000079761 Gm10071-201 processed_pseudogene Mus_musculus 0 414
ENSMUST00000079960 Rpl13-ps3-201 protein_coding Mus_musculus 0 344
ENSMUST00000104990 Gm7290-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000121199 Gm12466-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000129311 Rpl13-002 retained_intron Mus_musculus 0 285
ENSMUST00000132275 Rpl13-004 retained_intron Mus_musculus 0 285
ENSMUST00000117813 Rpl13-ps5-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000119124 Gm15131-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000119734 Gm12011-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000152444 Rpl13-003 retained_intron Mus_musculus 6e-35 152

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