C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563335 AC009120.8-001 ENSG00000260471 9606 + 16:74220929-74221427 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryTestisENST00000563335
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Testis
ENST00000563335 0.060±0.00 0.031±0.00 0.201±0.00 0.064±0.00 0.029±0.00 0.031±0.00 0.028±0.00 0.414±0.27 0.141±0.00 0.078±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090U CIL_00090U_0001 VISTA 16:73974670-74575347

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 566
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 564
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 544
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 529
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 507
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 484
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 473
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 270
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 0 268
ENSMUST00000121648 Gm6067-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 209
ENSMUST00000121356 Gm6079-001 processed_pseudogene Mus_musculus 2e-32 143
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 3e-30 135

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