C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: retinoblastoma binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564314 RBBP6-006 ENSG00000122257 9606 + 16:24537693-24570113 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000564314
Transcript ID Heart
ENST00000564314 0.516±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VB CIL_0003VB_0002 CGP 16:24255553-24572863
CIL_0003V8 CIL_0003V8_0002 CGP 16:24537693-24827632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052135 Rbbp6-001 protein_coding Mus_musculus 0 3801
ENSMUST00000071590 Rbbp6-002 protein_coding Mus_musculus 0 2257
ENSMUST00000116315 Gm14385-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000126053 Rbbp6-009 retained_intron Mus_musculus 0 575
ENSMUST00000156738 Rbbp6-008 retained_intron Mus_musculus 0 424

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