C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cylindromatosis (turban tumor syndrome)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564326 CYLD-006 ENSG00000083799 9606 + 16:50742081-50796711 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000564326
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000564326 2.290±0.00 2.447±0.00 2.782±0.00 4.259±0.00 3.651±1.98 2.429±0.00 1.562±0.00 2.111±1.17 4.371±0.00 3.090±0.46 3.459±1.20 1.465±0.86 16.351±9.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0001 UCNEbase 16:50459337-51906374
CIL_00090I CIL_00090I_0001 VISTA 16:50514444-51115745
CIL_00085B CIL_00085B_0001 VISTA 16:50535781-51137187
CIL_00090J CIL_00090J_0001 VISTA 16:50540952-51141798
CIL_00090K CIL_00090K_0001 VISTA 16:50643117-51244272
CIL_00090L CIL_00090L_0001 VISTA 16:50648118-51248778
CIL_00090M CIL_00090M_0001 VISTA 16:50676779-51277697
CIL_0003PR CIL_0003PR_0001 CGP 16:50693603-50801935
CIL_00090N CIL_00090N_0001 VISTA 16:50708342-51309204
CIL_0008AU CIL_0008AU_0001 VISTA 16:50722400-51323681
CIL_00077S CIL_00077S_0001 CGP 16:50742050-51151367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043526 Cyld-201 protein_coding Mus_musculus 0 3840
ENSMUST00000109626 Cyld-203 protein_coding Mus_musculus 0 3819
ENSMUST00000098519 Cyld-202 protein_coding Mus_musculus 0 3783
ENSMUST00000191467 RP23-303B4.1-001 processed_pseudogene Mus_musculus 0 1380

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