C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000565018 TCF4-001 ENSG00000196628 9606 - 18:55227884-55589520 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YZ CIL_0007YZ_0001 VISTA 18:54732639-55333995
CIL_0008CT CIL_0008CT_0001 VISTA 18:55004656-55608642
CIL_00091Y CIL_00091Y_0001 VISTA 18:55051447-55652813
CIL_0008DW CIL_0008DW_0001 VISTA 18:55122394-55723848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001011 ISS sequence-specific DNA binding RNA polymerase recruiting transcription factor activity
GO:0001077 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001087 ISS TFIIB-class binding transcription factor activity
GO:0001093 ISS TFIIB-class transcription factor binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 ISS transcription factor complex
GO:0006352 ISS DNA-templated transcription, initiation
GO:0006367 ISS transcription initiation from RNA polymerase II promoter
GO:0008022 IPI protein C-terminus binding
GO:0045666 ISS positive regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISS protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0065004 ISS protein-DNA complex assembly
GO:0070888 ISS E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114985 Tcf4-001 protein_coding Mus_musculus 0 3437
ENSMUST00000078486 Tcf4-201 protein_coding Mus_musculus 0 3136
ENSMUST00000114980 Tcf4-004 protein_coding Mus_musculus 0 3059
ENSMUST00000114982 Tcf4-002 protein_coding Mus_musculus 0 3059
ENSMUST00000066717 Tcf4-003 protein_coding Mus_musculus 0 2852
ENSMUST00000114978 Tcf4-007 protein_coding Mus_musculus 0 2226
ENSMUST00000114977 Tcf4-008 protein_coding Mus_musculus 0 2148
ENSMUST00000128706 Tcf4-005 retained_intron Mus_musculus 0 745
ENSMUST00000146908 Tcf4-012 retained_intron Mus_musculus 0 736
ENSMUST00000145918 Tcf4-014 processed_transcript Mus_musculus 0 632
ENSMUST00000136151 Tcf4-011 processed_transcript Mus_musculus 0 623
ENSMUST00000155695 Tcf4-006 processed_transcript Mus_musculus 0 553
ENSMUST00000136019 Tcf4-013 retained_intron Mus_musculus 0 433
ENSMUST00000126946 Tcf4-010 processed_transcript Mus_musculus 0 388
ENSMUST00000125154 Tcf4-009 processed_transcript Mus_musculus 0 281

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