C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000567815 RPL13-009 ENSG00000167526 9606 + 16:89560681-89563080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000567815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000567815 286.981±0.00 760.590±0.00 32.249±0.00 86.328±35.95 216.075±124.08 413.846±320.46 99.308±69.05 208.466±115.91 209.890±100.66 494.345±418.77 330.179±189.36 911.804±1052.46 1156.944±747.47 255.970±82.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0022626 TAS cytosolic ribosome
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000756 Rpl13-001 protein_coding Mus_musculus 0 758
ENSMUST00000120234 Gm12918-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000121821 Gm15710-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000079761 Gm10071-201 processed_pseudogene Mus_musculus 0 699
ENSMUST00000079960 Rpl13-ps3-201 protein_coding Mus_musculus 0 599
ENSMUST00000104990 Gm7290-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000132275 Rpl13-004 retained_intron Mus_musculus 0 586
ENSMUST00000121801 Rpl13-ps1-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000152444 Rpl13-003 retained_intron Mus_musculus 0 521
ENSMUST00000120713 Gm14585-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000117813 Rpl13-ps5-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000121199 Gm12466-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000119124 Gm15131-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000119734 Gm12011-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000129311 Rpl13-002 retained_intron Mus_musculus 0 305

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