C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 11, type 2, OB-cadherin (osteoblast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000567934 CDH11-003 ENSG00000140937 9606 - 16:64991913-65072260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000567934
Transcript ID Muscle
ENST00000567934 0.410±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SB CIL_0006SB_0002 CGP 16:64943753-66404786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075190 Cdh11-201 protein_coding Mus_musculus 0 1061
ENSMUST00000155660 Gm6483-003 processed_transcript Mus_musculus 0 725
ENSMUST00000153710 Gm6483-002 protein_coding Mus_musculus 0 725
ENSMUST00000140111 2610005L07Rik-001 processed_transcript Mus_musculus 0 710
ENSMUST00000133001 Gm6483-004 processed_transcript Mus_musculus 0 693
ENSMUST00000096485 Gm21811-001 unprocessed_pseudogene Mus_musculus 0 676
ENSMUST00000139264 2610005L07Rik-002 transcribed_unprocessed_pseudogene Mus_musculus 0 664
ENSMUST00000150051 6820431F20Rik-003 transcribed_unprocessed_pseudogene Mus_musculus 0 640
ENSMUST00000178995 Gm21092-202 protein_coding Mus_musculus 0 579
ENSMUST00000127799 Gm6483-001 protein_coding Mus_musculus 0 512
ENSMUST00000153748 6820431F20Rik-001 processed_transcript Mus_musculus 0 499
ENSMUST00000144307 Gm6483-006 retained_intron Mus_musculus 0 494
ENSMUST00000097690 Gm10557-201 pseudogene Mus_musculus 0 484
ENSMUST00000178451 Gm21092-201 protein_coding Mus_musculus 0 468
ENSMUST00000136929 Gm6483-005 retained_intron Mus_musculus 0 390

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