C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-oxoglutarate and iron-dependent oxygenase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000568397 OGFOD1-003 ENSG00000087263 9606 + 16:56451562-56476335 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverPlacentaENST00000568397
Transcript ID Breast Colon Kidney Liver Placenta
ENST00000568397 3.955±0.00 2.053±0.00 1.129±0.00 4.290±0.00 3.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048T CIL_00048T_0001 CGP 16:56361452-56452199
CIL_00048W CIL_00048W_0001 CGP 16:56429133-56479100
CIL_00048V CIL_00048V_0001 CGP 16:56451490-56520283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093301 Ogfod1-002 protein_coding Mus_musculus 0 1439
ENSMUST00000172674 Ogfod1-007 processed_transcript Mus_musculus 0 761
ENSMUST00000060632 Ogfod1-004 protein_coding Mus_musculus 0 726
ENSMUST00000109556 Ogfod1-001 protein_coding Mus_musculus 0 726
ENSMUST00000127634 Ogfod1-005 processed_transcript Mus_musculus 0 390
ENSMUST00000141636 Ogfod1-003 retained_intron Mus_musculus 0 316
ENSMUST00000145717 Ogfod1-006 retained_intron Mus_musculus 0 202

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