C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569150 ZKSCAN2-002 ENSG00000155592 9606 - 16:25239494-25257557 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverMuscleENST00000569150
Transcript ID Colon Heart Kidney Liver Muscle
ENST00000569150 0.343±0.00 0.101±0.00 0.395±0.00 0.282±0.00 0.184±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KP CIL_0005KP_0001 CGP 16:25215731-25257931
CIL_0003X1 CIL_0003X1_0001 CGP 16:25236001-26137688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042470 Zkscan2-001 protein_coding Mus_musculus 0 2156
ENSMUST00000125356 Zkscan2-003 protein_coding Mus_musculus 0 704
ENSMUST00000128217 Zkscan2-002 protein_coding Mus_musculus 0 584
ENSMUST00000079024 Zscan29-004 protein_coding Mus_musculus 8e-24 117
ENSMUST00000110661 Zscan29-001 protein_coding Mus_musculus 8e-24 117
ENSMUST00000163766 Zscan29-201 protein_coding Mus_musculus 7e-20 104
ENSMUST00000156370 Zscan29-003 retained_intron Mus_musculus 7e-20 104
ENSMUST00000040628 Zfp182-002 protein_coding Mus_musculus 0.00000000000002 86
ENSMUST00000115334 Zfp182-003 protein_coding Mus_musculus 0.00000000000002 86
ENSMUST00000115333 Zfp182-001 protein_coding Mus_musculus 0.00000000000002 86

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