C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scratch family zinc finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569446 SCRT1-001 ENSG00000261678 9606 - 8:144330565-144336281 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000569446
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000569446 0.010±0.00 0.022±0.00 10.028±8.88 0.038±0.00 0.034±0.00 0.034±0.00 0.075±0.00 0.011±0.00 0.020±0.00 0.041±0.00 0.099±0.00 0.557±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026R CIL_00026R_0001 CGP 8:144314584-144336281

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2001222 IEA regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096365 Scrt1-201 protein_coding Mus_musculus 0 2545
ENSMUST00000164703 Scrt1-202 protein_coding Mus_musculus 0 1882
ENSMUST00000064061 Scrt2-001 protein_coding Mus_musculus 0 573
ENSDART00000033127 scrt1a-201 protein_coding Danio_rerio 0 418
ENSDART00000053782 scrt2-201 protein_coding Danio_rerio 0 412

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