C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: derlin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000571476 DERL2-011 ENSG00000072849 9606 - 17:5474727-5486148 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLungMuscleOvaryENST00000571476
Transcript ID Brain Colon Heart Kidney Lung Muscle Ovary
ENST00000571476 6.513±0.00 8.728±0.00 4.401±0.00 7.514±0.00 10.094±0.00 5.616±0.00 9.131±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FL CIL_0000FL_0001 CGP 17:5440912-5486811
CIL_0002PM CIL_0002PM_0001 CGP 17:5471251-5490814

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018586 Derl2-005 nonsense_mediated_decay Mus_musculus 0 817
ENSMUST00000171041 Derl2-007 protein_coding Mus_musculus 0 501
ENSMUST00000143850 Derl2-001 protein_coding Mus_musculus 0 501
ENSMUST00000108523 Derl2-002 protein_coding Mus_musculus 0 501
ENSMUST00000140712 Derl2-003 retained_intron Mus_musculus 0 427
ENSMUST00000131340 Derl2-004 nonsense_mediated_decay Mus_musculus 0 211
ENSMUST00000132198 Derl2-006 nonsense_mediated_decay Mus_musculus 0 211

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